gklearn.utils

gklearn - utils module

Implement some methods to manage graphs

graphfiles.py : load .gxl and .ct files utils.py : compute some properties on networkX graphs

• gklearn.utils.graphdataset
  • get_dataset_attributes()
  • load_predefined_dataset()
• gklearn.utils.graphfiles
  • loadCT()
  • loadDataset()
  • loadFromDS()
  • loadFromXML()
  • loadGXL()
  • loadMAT()
  • loadSDF()
  • loadTXT()
  • saveDataset()
  • saveGXL()
• gklearn.utils.kernels
  • chi2_kernel()
  • cosine_kernel()
  • delta_kernel()
  • deltakernel()
  • exponential_kernel()
  • gaussian_kernel()
  • gaussiankernel()
  • highest_polynomial_kernel()
  • intersection_kernel()
  • inverse_multiquadratic_kernel()
  • kernelproduct()
  • kernelsum()
  • kronecker_delta_kernel()
  • laplacian_kernel()
  • linear_kernel()
  • linearkernel()
  • multiquadratic_kernel()
  • polynomial_kernel()
  • polynomialkernel()
  • sigmoid_kernel()
  • tanimoto_kernel()
• gklearn.utils.model_selection_precomputed
  • compute_gram_matrices()
  • model_selection_for_precomputed_kernel()
  • parallel_trial_do()
  • printResultsInTable()
  • read_gram_matrices_from_file()
  • trial_do()
• gklearn.utils.parallel
  • parallel_ged_mat()
  • parallel_gm()
  • parallel_me()
• gklearn.utils.trie
  • Trie
    • Trie.deleteWord()
    • Trie.getNode()
    • Trie.insertWord()
    • Trie.load_from_json()
    • Trie.load_from_pickle()
    • Trie.save_to_json()
    • Trie.save_to_pickle()
    • Trie.searchWord()
    • Trie.searchWordPrefix()
    • Trie.to_json()
• gklearn.utils.utils
  • SpecialLabel
    • SpecialLabel.DUMMY
  • check_json_serializable()
  • compute_distance_matrix()
  • compute_gram_matrices_by_class()
  • compute_vertex_kernels()
  • direct_product()
  • direct_product_graph()
  • dummy_edge()
  • dummy_node()
  • find_all_paths()
  • find_paths()
  • floydTransformation()
  • getSPGraph()
  • getSPLengths()
  • get_edge_labels()
  • get_graph_kernel_by_name()
  • get_mlti_dim_edge_attrs()
  • get_mlti_dim_node_attrs()
  • get_node_labels()
  • get_shortest_paths()
  • get_sp_graph()
  • graph_deepcopy()
  • graph_isIdentical()
  • is_basic_python_type()
  • normalize_gram_matrix()
  • nx_permute_nodes()
  • undefined_node()
  • untotterTransformation()