Index

C

commonwalkkernel() (in module gklearn.kernels.commonWalkKernel) compute_distance_matrix() (in module gklearn.utils.utils) compute_gram_matrices() (in module gklearn.utils.model_selection_precomputed) compute_gram_matrices_by_class() (in module gklearn.utils.utils)

compute_kernel_matrix() (in module gklearn.kernels.weisfeilerLehmanKernel) compute_subtree_kernel() (in module gklearn.kernels.weisfeilerLehmanKernel) computeVK() (in module gklearn.kernels.randomWalkKernel) computeW() (in module gklearn.kernels.randomWalkKernel)

D

deleteWord() (Trie method) deltakernel() (in module gklearn.utils.kernels) direct_product() (in module gklearn.utils.utils)

direct_product_graph() (in module gklearn.utils.utils) DUMMY (SpecialLabel attribute) dummy_edge() (in module gklearn.utils.utils) dummy_node() (in module gklearn.utils.utils)

F

filterGramMatrix() (in module gklearn.kernels.randomWalkKernel) find_all_path_as_trie() (in module gklearn.kernels.untilHPathKernel) find_all_paths() (in module gklearn.kernels.treeletKernel) (in module gklearn.utils.utils) find_all_paths_until_length() (in module gklearn.kernels.untilHPathKernel) find_all_walks() (in module gklearn.kernels.commonWalkKernel)

find_all_walks_until_length() (in module gklearn.kernels.commonWalkKernel) find_paths() (in module gklearn.kernels.treeletKernel) (in module gklearn.utils.utils) find_walks() (in module gklearn.kernels.commonWalkKernel) floydTransformation() (in module gklearn.utils.utils) func_fp() (in module gklearn.kernels.randomWalkKernel)

G

gaussiankernel() (in module gklearn.utils.kernels) get_canonkeys() (in module gklearn.kernels.treeletKernel) get_dataset_attributes() (in module gklearn.utils.graphdataset) get_edge_labels() (in module gklearn.utils.utils) get_graph_kernel_by_name() (in module gklearn.utils.utils) get_mlti_dim_edge_attrs() (in module gklearn.utils.utils) get_mlti_dim_node_attrs() (in module gklearn.utils.utils) get_node_labels() (in module gklearn.utils.utils) get_shortest_paths() (in module gklearn.kernels.structuralspKernel) (in module gklearn.utils.utils) get_sps_as_trie() (in module gklearn.kernels.structuralspKernel) getAllEdgeKernels() (in module gklearn.kernels.structuralspKernel) getAllNodeKernels() (in module gklearn.kernels.structuralspKernel) getLabels() (in module gklearn.kernels.randomWalkKernel) getNode() (Trie method) getSPGraph() (in module gklearn.utils.utils) getSPLengths() (in module gklearn.utils.utils) gklearn (module)

gklearn.kernels (module) gklearn.kernels.commonWalkKernel (module) gklearn.kernels.marginalizedKernel (module) gklearn.kernels.randomWalkKernel (module) gklearn.kernels.spKernel (module) gklearn.kernels.structuralspKernel (module) gklearn.kernels.treeletKernel (module) gklearn.kernels.untilHPathKernel (module) gklearn.kernels.weisfeilerLehmanKernel (module) gklearn.utils (module) gklearn.utils.graphdataset (module) gklearn.utils.graphfiles (module) gklearn.utils.kernels (module) gklearn.utils.model_selection_precomputed (module) gklearn.utils.parallel (module) gklearn.utils.trie (module) gklearn.utils.utils (module) graph_deepcopy() (in module gklearn.utils.utils) graph_isIdentical() (in module gklearn.utils.utils)

I

insertWord() (Trie method)

K

kernelproduct() (in module gklearn.utils.kernels)

kernelsum() (in module gklearn.utils.kernels)

L

linearkernel() (in module gklearn.utils.kernels) load_from_json() (Trie method) load_from_pickle() (Trie method) load_predefined_dataset() (in module gklearn.utils.graphdataset) loadCT() (in module gklearn.utils.graphfiles) loadDataset() (in module gklearn.utils.graphfiles)

loadFromDS() (in module gklearn.utils.graphfiles) loadFromXML() (in module gklearn.utils.graphfiles) loadGXL() (in module gklearn.utils.graphfiles) loadMAT() (in module gklearn.utils.graphfiles) loadSDF() (in module gklearn.utils.graphfiles) loadTXT() (in module gklearn.utils.graphfiles)

M

marginalizedkernel() (in module gklearn.kernels.marginalizedKernel)

model_selection_for_precomputed_kernel() (in module gklearn.utils.model_selection_precomputed)

N

normalize_gram_matrix() (in module gklearn.utils.utils)

P

parallel_gm() (in module gklearn.utils.parallel) parallel_me() (in module gklearn.utils.parallel) parallel_trial_do() (in module gklearn.utils.model_selection_precomputed)

paths2labelseqs() (in module gklearn.kernels.untilHPathKernel) polynomialkernel() (in module gklearn.utils.kernels) printResultsInTable() (in module gklearn.utils.model_selection_precomputed)

R

randomwalkkernel() (in module gklearn.kernels.randomWalkKernel)

read_gram_matrices_from_file() (in module gklearn.utils.model_selection_precomputed)

S

save_to_json() (Trie method) save_to_pickle() (Trie method) saveDataset() (in module gklearn.utils.graphfiles) saveGXL() (in module gklearn.utils.graphfiles) searchWord() (Trie method) searchWordPrefix() (Trie method)

SpecialLabel (class in gklearn.utils.utils) spkernel() (in module gklearn.kernels.spKernel) spkernel_do() (in module gklearn.kernels.spKernel) ssp_do_trie() (in module gklearn.kernels.structuralspKernel) structuralspkernel() (in module gklearn.kernels.structuralspKernel) structuralspkernel_do() (in module gklearn.kernels.structuralspKernel)

T

to_json() (Trie method) traverseBothTriee() (in module gklearn.kernels.structuralspKernel) traverseBothTriem() (in module gklearn.kernels.structuralspKernel) traverseBothTrieu() (in module gklearn.kernels.structuralspKernel) traverseBothTriev() (in module gklearn.kernels.structuralspKernel) traverseTrie2e() (in module gklearn.kernels.structuralspKernel)

traverseTrie2m() (in module gklearn.kernels.structuralspKernel) traverseTrie2u() (in module gklearn.kernels.structuralspKernel) traverseTrie2v() (in module gklearn.kernels.structuralspKernel) treeletkernel() (in module gklearn.kernels.treeletKernel) trial_do() (in module gklearn.utils.model_selection_precomputed) Trie (class in gklearn.utils.trie)

U

undefined_node() (in module gklearn.utils.utils)

untilhpathkernel() (in module gklearn.kernels.untilHPathKernel) untotterTransformation() (in module gklearn.utils.utils)

W

weisfeilerlehmankernel() (in module gklearn.kernels.weisfeilerLehmanKernel) wl_iteration() (in module gklearn.kernels.weisfeilerLehmanKernel) wrapper_cg_labled_do() (in module gklearn.kernels.randomWalkKernel) wrapper_cg_unlabled_do() (in module gklearn.kernels.randomWalkKernel) wrapper_compute_subtree_kernel() (in module gklearn.kernels.weisfeilerLehmanKernel) wrapper_cw_exp() (in module gklearn.kernels.commonWalkKernel) wrapper_cw_geo() (in module gklearn.kernels.commonWalkKernel) wrapper_find_all_path_as_trie() (in module gklearn.kernels.untilHPathKernel) wrapper_find_all_paths_until_length() (in module gklearn.kernels.untilHPathKernel) wrapper_fp_labled_do() (in module gklearn.kernels.randomWalkKernel) wrapper_get_canonkeys() (in module gklearn.kernels.treeletKernel) wrapper_getSP_naive() (in module gklearn.kernels.structuralspKernel) wrapper_getSP_trie() (in module gklearn.kernels.structuralspKernel)

wrapper_getSPGraph() (in module gklearn.kernels.spKernel) wrapper_marg_do() (in module gklearn.kernels.marginalizedKernel) wrapper_sd_do() (in module gklearn.kernels.randomWalkKernel) wrapper_se_do() (in module gklearn.kernels.randomWalkKernel) wrapper_sp_do() (in module gklearn.kernels.spKernel) wrapper_ssp_do() (in module gklearn.kernels.structuralspKernel) wrapper_ssp_do_trie() (in module gklearn.kernels.structuralspKernel) wrapper_treeletkernel_do() (in module gklearn.kernels.treeletKernel) wrapper_uhpath_do_kernelless() (in module gklearn.kernels.untilHPathKernel) wrapper_uhpath_do_naive() (in module gklearn.kernels.untilHPathKernel) wrapper_uhpath_do_trie() (in module gklearn.kernels.untilHPathKernel) wrapper_untotter() (in module gklearn.kernels.marginalizedKernel) wrapper_wl_iteration() (in module gklearn.kernels.weisfeilerLehmanKernel)